Serdar Balcı • Research
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On this page

  • What this project is
  • Objectives
  • Status
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  • Tools and repositories
  • Related work
  • How to contribute
  • Pitfalls
  1. Morphology
  2. Omentum

Omentum

Morphology and diagnostic patterns in omental specimens — peritoneal surface staging, metastatic disease, and benign mimics

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What this project is

Omental specimens — biopsies, partial resections, and “omentectomy for staging” — cross almost every oncologic sign-out queue. This project consolidates the group’s omental morphology work: what’s being submitted, how it’s sampled, and which findings actually change management.

Objectives

  • Describe the case mix of omental specimens by indication (staging, symptomatic, incidental).
  • Quantify gross and microscopic sampling adequacy.
  • Characterize the spectrum of metastatic disease and benign mimics (reactive mesothelium, torsion / infarct, inflammatory changes).
  • Identify cases in which omental findings changed stage or management.

Status

Stream Status
Cohort identification Active
Sampling adequacy review Draft rubric
Metastatic case series Planning
Benign-mimic teaching set Drafted

Data

  • Omental resections and biopsies with accompanying gross descriptions.
  • De-identified WSIs on the Memorial share when available.
  • Linked primary tumor diagnoses via hashed accession IDs.

Tools and repositories

  • omentum — primary repo.
  • Histology review in QuPath; annotation SOP on the Home page.
  • Statistics via ClinicoPathDescriptives; agreement via meddecide.

Related work

  • Pancreas Morphology — upstream primaries for many omental metastases.
  • HER2 Gastro — gastric primaries contribute to the omental cohort.

How to contribute

  1. Review the sampling-adequacy rubric and flag ambiguous rules.
  2. Pilot-code 20 cases against the rubric and compare to the reference reader.
  3. Annotate one benign-mimic teaching case in QuPath and submit the GeoJSON.

Pitfalls

  • “Positive for metastatic carcinoma” in a staging omentectomy changes stage; confirm the linkage to the primary tumor diagnosis before any aggregation.
  • Don’t conflate true metastatic deposits with transcoelomic surface implants without the gross correlate — they are prognostically different.
  • Sample-size-driven conclusions are tempting in omentum studies. Keep the denominator (number of tissue blocks sampled) in every table.

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